| DISEASE | Powdery mildew observed | Powdery mildew caused by Erysiphe species : resistance/suspectible | N - Powdery Mildew was not observed on plants in this enviroment. May or may not be resistant | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| DISEASE | Fusarium Root Rot percent infection | Fusarium root rot caused by Fusarium solani f.sp. pisi. incidence based on above ground symptoms(0% to 100%) incidence. Zero meaning no incidence/symptoms. | 10.0 | | PEA.FUSARIUM.ROOT.ROOT.2016.COYNE | PI 275821 2014psp SD | Not Available |
| GROWTH | Plant Height, final | Plant height of a typical plant in centimeters from the ground to tip at maturity. | 116 | 5 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| GROWTH | Plant Height, final | Plant height of a typical plant in centimeters from the ground to tip at maturity. | 65 | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| GROWTH | Plant Height, final | Plant height of a typical plant in centimeters from the ground to tip at maturity. | 85 | 1 | PEA.2017.CFERRY.PSP | PI 275821 2012psp SD | Not Available |
| GROWTH | Plant Height, final | Plant height of a typical plant in centimeters from the ground to tip at maturity. | 98 | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| GROWTH | Growth habit | General growth habit of the accession | SD - SD = Semi-Dwarf | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Node Number | Number of nodes on the main stem that have pods. | 22 | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Node Number to First Flower | A count from the second trifid bract as one, up to and including the first flowering node when 50% of the plants in a planting are flowering. Expressed as an average of five randomly chosen plants (in integers). | 14 | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Node Number to First Flower | A count from the second trifid bract as one, up to and including the first flowering node when 50% of the plants in a planting are flowering. Expressed as an average of five randomly chosen plants (in integers). | 15 | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Node Number to First Flower | A count from the second trifid bract as one, up to and including the first flowering node when 50% of the plants in a planting are flowering. Expressed as an average of five randomly chosen plants (in integers). | 9 | 25 | PEA.2017.CFERRY.PSP | PI 275821 2012psp SD | Not Available |
| MORPHOLOGY | Flower Color | Flower color | M - Mixed | 29 | PEA.MP3.PHENOTYPE.CF | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Flower Color | Flower color | W - White | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Flower Color | Flower color | W - White | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Flower Color | Flower color | W - White | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Flowers per Peduncle | Maximum number of flowers per peduncle. | 2 | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Flowers per Peduncle | Maximum number of flowers per peduncle. | 2 | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Flowers per Peduncle | Maximum number of flowers per peduncle. | 2 | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod Length | Average length of pods from first reproductive node of five different plants at full pod stage recorded in centimeters. Expressed to one decimal place. | 6.4 | 5 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod Color | Pod color, taken at first reproductive node at full pod stage. | G - Green | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Pod Color | Pod color, taken at first reproductive node at full pod stage. | G - Green | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod Color | Pod color, taken at first reproductive node at full pod stage. | G - Green | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod Shape | Pod shape measured at flat pod stage. | S - Straight | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Pod Shape | Pod shape measured at flat pod stage. | S - Straight | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod Shape | Pod shape measured at flat pod stage. | S - Straight | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod Apex | Pod apex measured at flat pod stage. | B - Blunt | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Pod Apex | Pod apex measured at flat pod stage. | B - Blunt | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod Apex | Pod apex measured at flat pod stage. | B - Blunt | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod Type | Pod type taken at full pod stage on first reproductive node. | NE - Non-edible | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Seeds per Pod | Fully develops on first reproductive node. Average number of seeds from five longest pods, each from five different plants. Expressed to one decimal place. | 4.8 | 25 | PEA.2017.CFERRY.PSP | PI 275821 2012psp SD | Not Available |
| MORPHOLOGY | Seeds per Pod | Fully develops on first reproductive node. Average number of seeds from five longest pods, each from five different plants. Expressed to one decimal place. | 5 | 5 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Seed Surface | Seed surface | O - Other | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Seedcoat Color | Seedcoat color | P - Pigmented | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Cotyledon Color | Cotyledon color, should be evaluated from unweathered, unbleached pods. | Y - Yellow | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Hilum Color | Hilum color | P - Pigmented | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Leaflet Morphology | Leaflet morphology | N - Normal | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Leaflet Morphology | Leaflet morphology | N - Normal | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Leaflet Morphology | Leaflet morphology | N - Normal | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Stipules | Stipules | N - Normal | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Stipules | Stipules | N - Normal | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Stipules | Stipules | N - Normal | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Stem Fasciation | Stem fasciation | N - No | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Stem Fasciation | Stem fasciation | N - No | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Seed weight 100 | Weight of 100 seeds in grams. | 23 | | PEA.SEEDWEIGHT.WRPIS | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Seed weight 100 | Weight of 100 seeds in grams. | 23.5 | | PEA.SEEDWEIGHT.WRPIS | PI 275821 2012psp SD | Not Available |
| MORPHOLOGY | Seed Pattern | Pattern of the seed color distribution | M - Mixed | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Seed Pattern Color | Color of the seed pattern | BU - Blue | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod Wall Neoplasia | Pod wall Neoplasia | no - No pod wall neoplasia | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pod shatter | Notes whether pods shatter prior to harvest of accession. | - - N | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pods per peduncle | Number of pods per peduncle if the same number occurs on several plants in the accession. | 2 | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pods per peduncle | Number of pods per peduncle if the same number occurs on several plants in the accession. | 2 | 25 | PEA.2017.CFERRY.PSP | PI 275821 2012psp SD | Not Available |
| MORPHOLOGY | Pods per peduncle | Number of pods per peduncle if the same number occurs on several plants in the accession. | 2 | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pods per plant | Number of pods per plant averaged | 13 | 3 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Pods per plant | Number of pods per plant averaged | 28 | 1 | PEA.2017.CFERRY.PSP | PI 275821 2012psp SD | Not Available |
| MORPHOLOGY | Axil pigmentation | Anthocyanin ring (pink to red) on stipule axil | Y - Has axil pigmentation on stipule axil | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Stem basal branching | Number of basal branches at lower nodes of mature plant | 3 | | PEA.2010.GREENHOUSE.PSP | PI 275821 2009psp SD | Not Available |
| MORPHOLOGY | Peducle length | Peduncle length in millimeters | 103 | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| MORPHOLOGY | Peducle length | Peduncle length in millimeters | 7 | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| OTHER | Image/picture1 | A picture or image | flower | | PEA.IMAGE.2012.CFERRY.PSP | PI 275821 2009psp SD | Not Available |
| OTHER | Image/picture1 | A picture or image | tendril | | PEA.IMAGE.2012.CFERRY.PSP | PI 275821 2009psp SD | Not Available |
| PHENOLOGY | Day of first bloom | Day of the year when flowering begins. | 157 | 25 | PEA.2017.CFERRY.PSP | PI 275821 2012psp SD | Not Available |
| PHENOLOGY | Days to flower | Number of days from sowing seed to first observed flower | 68 | | PEA.2014.PULLMAN.PSP | PI 275821 2014psp SD | Not Available |
| PHENOLOGY | Days to flower | Number of days from sowing seed to first observed flower | 70 | 25 | PEA.2017.CFERRY.PSP | PI 275821 2012psp SD | Not Available |
| PHENOLOGY | Days to flower | Number of days from sowing seed to first observed flower | 75 | 63 | PEA.2024.SHOUSE | PI 275821 2014psp SD | Not Available |
| PHENOLOGY | Days to Maturity | Number of days from sowing to maturity/harvest | 108 | 25 | PEA.2017.CFERRY.PSP | PI 275821 2012psp SD | Not Available |
| PHENOLOGY | Days - First Bloom to Maturity | Number of days from first bloom to maturity | 38 | 25 | PEA.2017.CFERRY.PSP | PI 275821 2012psp SD | Not Available |
| SUBSET | Pea single plant | Accessions was developed by selecting seed from a single plant | Y - Yes, The accessions came from a single plant | | PEA.SINGLE.PLANT | PI 275821 2009psp SD | Not Available |
| SUBSET | Pisum Genetic Data | Accessions with Genetic Data | SNP.GENOTYPING.2015 | | An Excel file with the markers and genotypes">PEA.SNP.GENOTYPING.2015 | | Not Available |
| SUBSET | Pisum Genetic Data | Accessions with Genetic Data | SNP.PSP.PLUS.COLLECTION.2017 | | A ZIP'ed TEXT file with the markers and data (7.3 Mb in size)
A ZIP'ed TEXT file with the markers and data in VCF file suffix (28 Mb in size)
Abstract:
Globally, pea (Pisum sativum L.) is an important temperate legume crop for food, feed, and fodder, and many breeding programs exist to develop cultivars adapted to these end uses. In order to manage and utilize genetic resources for pea improvement, the USDA Pea Single Plant Plus Collection (PSPPC), which contains 431 Pisum accessions with morphological, geographic, and taxonomic diversity, was assembled. To maximize the value of this collection for trait mapping and genomics-assisted breeding projects, detailed genetic characterization was performed. To that end, genotyping-by-sequencing―a cost-effective method for de novo SNP marker discovery―was used to generate 66 591 high-quality SNPs. These data allowed us to identify accessions divergent from mainstream breeding germplasm that could serve as sources of novel, favorable alleles. In particular, a group of accessions from Central Asia appeared nearly as diverse as a sister species, P. fulvum, and subspecies, P. sativum subsp. elatius. Accession genotypes can be paired with new and existing phenotype data for trait mapping; as proof-of-concept, Mendel’s A gene controlling flower color was localized to its known position. SNP data were also used to define a smaller core collection of 108 accessions with similar levels of genetic diversity as the entire PSPPC, resulting in a smaller germplasm set for research screening and evaluation under limited resources. Taken together, the results presented in this study along with the release of a publicly available SNP data set comprise a valuable resource for supporting worldwide pea genetic improvement efforts.
Michael Mazourek, Plant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY 14853, USA Email: mm284@cornell.edu Phone: 607-254-7256 Fax: 607-255-6683
">PEA.SNP.PSP.PLUS.COLLECTION.2017 | | Not Available |
| SUBSET | MP3 | MP3 (More Protein, More peas, More Profit) is a genetic diversity panel was selected from the USDA pea plant genetic resource collection based on yellow cotyledon and round seed surface. First selections were from the pea PSP collection, 212 accessions (Cheng et al., 2015). Second selections were 226 accessions highest seed protein concentration, reported from a two-year pea field study of 876 accessions (Jermyn & Slinkard, 1977). This subset has been sequenced using GBS single enzyme of Elshire et al (2011). | Y - Yes, The accession is part of the MP3 subset | | PEA.MP3.PSP | PI 275821 2014psp SD | Not Available |
| SUBSET | MP3 | MP3 (More Protein, More peas, More Profit) is a genetic diversity panel was selected from the USDA pea plant genetic resource collection based on yellow cotyledon and round seed surface. First selections were from the pea PSP collection, 212 accessions (Cheng et al., 2015). Second selections were 226 accessions highest seed protein concentration, reported from a two-year pea field study of 876 accessions (Jermyn & Slinkard, 1977). This subset has been sequenced using GBS single enzyme of Elshire et al (2011). | Y - Yes, The accession is part of the MP3 subset | | PEA.MP3.PHENOTYPE.CF | PI 275821 2014psp SD | Not Available |