Details for: GSOR 312015, Oryza sativa L., 'FR13A'


Summary Data
Taxonomy:
Oryza sativa L.
Cultivar:
'FR13A'
Origin:
Donated – India
Received by NPGS:
30 Apr 2010
Improvement Status:
Genetic material
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Availability
This accession is not available. Contact site for status.
 
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PANICLE

Core Passport Data
Taxonomy:
Oryza sativa L.
Cultivar:
'FR13A'
Origin:
Donated – India
Received by NPGS:
30 Apr 2010
Improvement Status:
Genetic material
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Source History
Accession Group(s)
Group name: GSOR Rice Diversity Panel 1
Note: 
To search for accessions in this group, click the following link. GSOR Rice Diversity Panel 1

Accession Names and Identifiers
'FR13A'
Type: Cultivar name

NSFTV# 649
Type: Developer identifier

GSOR 312015
Type: Site identifier
Group: ORYZASNP

IRGC 117267
Type: Other or unclassified name

Narrative
A consortium of NRI funded researchers at Colorado State University, The Institute for Genomic Research, the International Rice Research Institute, Perlegen Sciences, and the Max Planck Institute collaborated on the OryzaSNP Project that involved genome-wide single nucleotide polymorphism (SNP) discovery across a unique fraction of the rice genome. This partnership has identified SNPs from across the whole genome of 20 rice cultivars. SNPs are a marker of genetic variation between individuals of species that allow scientists to identify regions of genetic variation that may be linked. Examples of traits that might be linked include plant development, yield, disease resistance, drought tolerance, and nutritional value. Rice is the world's top food crop and principal source of nourishment for nearly half the world's population. By identifying and comparing differences in DNA sequences, the new knowledge will accelerate development of hardier, more productive types of rice, particularly for people in the poorest but fastest growing nations. The consortium released all the SNP data at a public workshop held during the 5th International Symposium of Rice Functional Genomics, October 15-17, 2007, in Tsukuba, Japan. The research team facilitated discussions with participants on how to use the many SNPs generated to forward rice genomics, genetics and breeding.
Oryza sativa L.
Genus:
Oryza
Section:
Oryza
Subsection:
Oryza
Family:
Poaceae (alt. Gramineae)
Subfamily:
Oryzoideae
Tribe:
Oryzeae
Subtribe:
Oryzinae
Nomen number:

26077
Place of publication:

Sp. pl. 1:333. 1753
Comment:
some seed lots of domesticated rice may contain contaminants of a noxious weed hybrid-form that are not distinguishable by seed visualization, which is responsible for the rice-growing state's noxious-weed seed regulations indicated below
Verified:
05/11/1992 by ARS Systematic Botanists.
Other conspecific taxa
Autonyms (not in current use), synonyms and invalid designations
Autonym(s)
Oryza sativa L. f. sativa
Oryza sativa L. subsp. sativa
Oryza sativa L. var. sativa

Heterotypic Synonym(s)
Common names
LanguageNameAlternate namenoteseqCitation
EnglishAsian rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Englishlowland rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Englishrice  1Wiersema, J. H. & B. León. 1999. World economic plants: a standard reference CRC Press, Boca Raton, FL.
Englishupland rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Arabicrozz  2Boulos, L. 1999-. Flora of Egypt
Frenchriz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
GermanReis  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Indiachavel  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Italianriso  2Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Japanese Rōmajiine  2Batra, L. R. 1995. Names of Japanese plants sorted by their Japanese names in Romanized Katakana and scientific nomenclature
Portuguesearroz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Spanisharroz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Swedishris  2Aldén, B., S. Ryman, & M. Hjertson. 2012. Svensk Kulturväxtdatabas, SKUD (Swedish Cultivated and Utility Plants Database; online resource)
Transcribed Chinesedao  2Wu Zheng-yi & P. H. Raven et al., eds. 1994-. Flora of China (English edition).
Annotations
Other Links
Click here to go to the Rice Diversity website for additional information
Click here to be directed to the GSOR website to download Excel file of phenotypic and SSR marker data.
Deposit Form
Deposit Form
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Pathogens
Vouchers
Citations
  • Ali, M. L., A. M. McClung, M. H. Jia, J. A. Kimball, S. R. McCouch, & G. C. Eizenga. 2011. A rice diversity panel evaluated for genetic and agro-morphological diversity between subpopulations and its geographic distribution. Crop Sci. (Madison) 51:2021-2035. DOI: 10.2135/cropsci2010.11.0641. Number of accessions cited: 410
  • Dimpka, S. O. N., Z. Lahari, R. Shrestha, A. Douglas, G. Gheysen, & A. H. Price. 2015. A genome-wide association study of a global rice panel reveals resistance in Oryza sativa to root-knot nematodes. J. Exp. Bot. 67(4):1191-1200. DOI: 10.1093/jxb/erv470. Number of accessions cited: 419
  • Eizenga, G. C., M. L. Ali, R. J. Bryant, K. M. Yeater, A. M. McClung, & S. R. McCouch. 2014. Registration of the rice diversity panel 1 for genome-wide association studies. J. Pl. Registr. 8(1):109. Number of accessions cited: 423
  • Eizenga, Georgia C., Anna M. McClung, & Trevis D. Huggins. 2021. Registration of two Oryza sativa tropical japonica germplasm lines selected for panicle architecture and grain size traits. J. Pl. Registr. 2021;1-10. DOI: 10.1002/plr.20145. Number of accessions cited: 168
  • Eizenga, Georgia C., Anna M. McClung, & Trevis D. Huggins. 2021. Registration of two Oryza sativa tropical japonica germplasm lines selected for panicle architecture and grain size traits. J. Pl. Registr. 2021:1-10. DOI: 10.1002/plr.20145. Number of accessions cited: 419
  • McCouch, S. R. et al. 2016. Open access resources for genome-wide association mapping in rice. Nat. Commun. 7:10532. DOI: 10.1038/NCOMMS10532. Number of accessions cited: 1720
  • McNally, K. L., K. L. Childs, R. Bohnert, R. M. Davidson, K. Zhao, V. J. Ulat, G. Zeller, R. M. Clark, D. R. Hoen, T. E. Bureau, R. Stokowski, D. G. Ballinger, K. A. Frazer, D. R. Cox, B. Padhukasahasram, C. D. Bustamante, D. Weigel, D. J. Mackill, R. M. Bruskiewich, G. Ratsch, C. R. Buell, H. Leung, & J. E. Leach. 2009. Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proc. Natl. Acad. Sci. U.S.A. 106:12273-12278. DOI: 10.1073/pnas.0900992106. Number of accessions cited: 20
  • McNally, K. L., R. Bruskiewich, D. Mackill, C. R. Buell, J. E. Leach, & H. Leung. 2006. Sequencing multiple and diverse rice varieties. Connecting whole-genome variation with phenotypes. Pl. Physiol. (Lancaster) 141:26-31. Number of accessions cited: 9
  • McNally, K., R. Bruskiewich, D. Mackill, D. Weigel, K. Frazer, K. Childs, R. Buell, J. Leach, & H. Leung. 2007. The OryzaSNP Project - SNP discovery in diverse rice. Molec. Pl. Breed. 5(2):246-247. Number of accessions cited: 20
  • Norton, G. J. et al. 2014. Genome Wide Association Mapping of Grain Arsenic, Copper, Molybdenum and Zinc in Rice (Oryza sativa L.) Grown at Four International Field Sites. PLoS One 9(2):e89685. DOI: 10.1371/journal.pone.0089685. Number of accessions cited: 29
  • Shakiba, E., J. D. Edwards, F. Jodari, S. E. Duke, A. M. Baldo, P. Korniliev, S. R. McCouch, & G. C. Eizenga. 2017. Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis. PLoS One 12(3):e0172133. DOI: 10.1371/journal.pone.0172133. Number of accessions cited: 419
  • Shimoyama, Naoki, M. Johnson, A. Beaumont, & M. Schlappi. 2020. Multiple cold tolerance trait phenotyping reveals shared quantitative trait loci in Oryza sativa. Rice 2020:13:57. DOI: 10.1186/s12284-020-00414-3. Number of accessions cited: 419
  • Wang, D., J. Liu, C. Li, H. Kang, Y. Wang, X. Tan, M. Liu, Y. Deng, Z. Wang, Y. Liu, D. Zhang, Y. Xiao, & G.-L. Wang. 2016. Genome-wide association mapping of cold tolerance genes at the seedling stage in rice. Rice 9:61. DOI: 10.1186/s12284-016-0133-2. Number of accessions cited: 419
  • Zhao, K. et al. 2010. Genomic diversity and introgression in O. sativa reveal the impact of domestication and breeding on the rice genome. PLoS One 5(5):e10780. DOI: 10.1371/journal.pone.0010780. Number of accessions cited: 410
  • Zhao, Keyan, C.-W. Tung, G. C. Eizenga, M. H. Wright, Md. L. Ali, A. H. Price, G. J. Norton, M. R. Islam, A. Reynolds, J. Mezey, A. M. McClung, C. D. Bustamate, & S. R. McCouch. 2011. Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa. Nat. Commun. 2:467. DOI: 10.1038/ncomms1467. Number of accessions cited: 410
  • Zhu, D., H. Kang, Z. Li, M. Liu, X. Zhu, Y. Wang, D. Wang, Z. Wang, W. Liu, & G.-L. Wang. 2016. A genome-wide association study of field resistance to Magnaporthe oryzae in rice. Rice 9:44. DOI: 10.1186/s12284-016-0116-3. Number of accessions cited: 419
Pedigree
Intellectual Property Rights
IRRI Disclaimer. Issued: 26 Oct 1994.

Observations

Phenotype Data

CategoryDescriptorDescriptionValueSample SizeStudyInventoryAvailability
MORPHOLOGYBran ColorColor of seed coat (bran/pericarp) when fully mature and dry.5 - RED NSF.PROJECT.OBS Not Available
Genotype Data
Poly TypeMarkerValueEvaluationStudy TypeInventory
MICROSATELLITERM00180 80RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM011missingRICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM118161 161RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM124265 265RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM125123 123RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM133228 228RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM152132 132RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM154183 183RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM161162 162RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM162209 209RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM171336 336RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM178120 120RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM208170 170RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM215152 152RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM22194 194RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM237194 194RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM27192 92RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM277118 118RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM284142 142RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM28797 97RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM307121 121RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM316203 203RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM338181 181RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM408119 119RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM41366 66RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM431247 247RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM44109 109RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM447110 110RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM452198 198RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM454271 271RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM484294 294RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM495157 157RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM5105 105RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM507255 255RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM536229 229RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV
MICROSATELLITERM55218 218RICEDIVERSITY2011CROPSCIGDIVERSITYGSOR 312015 0.003 LV