Details for: GSOR 100, Oryza sativa L., NIPPONBARE


Summary Data
Taxonomy:
Oryza sativa L.
Top Name:
NIPPONBARE
Origin:
Developed – Arkansas, United States
Received by NPGS:
01 Jan 2004
Improvement Status:
Genetic material
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Availability
FormQuantityNoteInventoryCart
Seed100 gramGSOR 100 A21FA3 SD
 
There are no images for this accession.

Core Passport Data
Taxonomy:
Oryza sativa L.
Top Name:
NIPPONBARE
Origin:
Developed – Arkansas, United States
Received by NPGS:
01 Jan 2004
Improvement Status:
Genetic material
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Source History
Developed
2004.
Arkansas, United States

Developer(s):
Accession Names and Identifiers
NIPPONBARE
Type: Developer identifier
Group: NIPPONBARE

GSOR 100
Type: Site identifier
Group: NIPPONBARE

Narrative
This material, descended via Cornell, is from the single plant selection identified by Dr. T. Sasaki of Japan, for the International Rice Gene Sequencing Project.
Oryza sativa L.
Genus:
Oryza
Section:
Oryza
Subsection:
Oryza
Family:
Poaceae (alt. Gramineae)
Subfamily:
Oryzoideae
Tribe:
Oryzeae
Subtribe:
Oryzinae
Nomen number:

26077
Place of publication:

Sp. pl. 1:333. 1753
Comment:
some seed lots of domesticated rice may contain contaminants of a noxious weed hybrid-form that are not distinguishable by seed visualization, which is responsible for the rice-growing state's noxious-weed seed regulations indicated below
Verified:
05/11/1992 by ARS Systematic Botanists.
Other conspecific taxa
Autonyms (not in current use), synonyms and invalid designations
Autonym(s)
Oryza sativa L. f. sativa
Oryza sativa L. subsp. sativa
Oryza sativa L. var. sativa

Heterotypic Synonym(s)
Common names
LanguageNameAlternate namenoteseqCitation
EnglishAsian rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Englishlowland rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Englishrice  1Wiersema, J. H. & B. León. 1999. World economic plants: a standard reference CRC Press, Boca Raton, FL.
Englishupland rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Arabicrozz  2Boulos, L. 1999-. Flora of Egypt
Frenchriz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
GermanReis  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Indiachavel  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Italianriso  2Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Japanese Rōmajiine  2Batra, L. R. 1995. Names of Japanese plants sorted by their Japanese names in Romanized Katakana and scientific nomenclature
Portuguesearroz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Spanisharroz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Swedishris  2Aldén, B., S. Ryman, & M. Hjertson. 2012. Svensk Kulturväxtdatabas, SKUD (Swedish Cultivated and Utility Plants Database; online resource)
Transcribed Chinesedao  2Wu Zheng-yi & P. H. Raven et al., eds. 1994-. Flora of China (English edition).
Annotations
Other Links
Actions
Pathogens
Vouchers
Citations
  • Atighi, M. R., B. Verstraeten, T. De Meyer, & T. Kyndt. 2020. Genome-wide DNA hypomethylation shapes nematode pattern-triggered immunity in plants. New Phytol. 227:545-558. Number of accessions cited: 1
  • Chen, M.-S., X. Liu, H. Wang, & M. El-Bouhssini. 2009. Hessian Fly (Diptera: Cecidomyiidae) interactions with barley, rice, and wheat seedlings. J. Econ. Entomol. 102(4)1663-1672. Number of accessions cited: 1
  • Deshpande, A., S. R. Dhadi, E. J. Hager, & W. Ramakrishna. 2011. Anticancer activity of rice callus suspension culture. Phytotherapy Res. 26:1075-1081. DOI: 10.1002/ptr.3699. Number of accessions cited: 1
  • Dhadi, S. R., A. Deshpande, & W. Ramakrishna. 2012. A novel non-wounding transient expression assay for cereals mediated by Agrobacterium tumefaciens. Pl. Molec. Biol. Reporter 30:36-45. DOI: 10.1007/s11105-011-0314-5. Note: ISSN: 0735-9640 (Print) 1572-9818 (Online) Number of accessions cited: 1
  • Hongli, Ji, G. Gheysen, C. Ullah, R. Verbeek, C. Shang, D. De Vleesschauwer, M. Hofte, & T. Kyndt. 2015. The role of thionins in rice defence against root pathogens. Molec. Pl. Pathol. 16(8):870-881. DOI: 10.1111/mpp.12246. Number of accessions cited: 1
  • Huang, Wen-kun, Hong-Li Ji, G. Gheysen, & T. Kyndt. 2016. Thiamine-induced priming against root-knot nematode infection in rice involves lignification and hydrogen peroxide generation. Molec. Pl. Pathol. 17(4):614-624. DOI: 10.1111/mpp.12316. Number of accessions cited: 1
  • Huang, Wen-kun, Hong-Li Ji, G. Gheysen, J. Debode, & T. Kyndt. 2015. Biochar-amended potting medium reduces the susceptibility of rice to root-knot nematode infections. B. M. C. Pl. Biol. 15:267. DOI: 10.1186/s12870-015-0654-7. Number of accessions cited: 1
  • Janevska, S., U. Guldener, M. Sulyok, B. Tudzynski, & L. Studt. 2018. Set1 and Kdm5 are antagonists for H3K4 methylation and regulators of the major conidiation-specific transcription factor gene ABA1 in Fusarium fujikuroi. Environm. Microbiol. 20(9):3343-3362. DOI: 10.1111/1462-2920.14339. Number of accessions cited: 1
  • Ji, H. et al. 2015. β-aminobutyric acid-induced resistance against root-knot nematodes in rice is based on increased basal defence. Molec. Pl.-Microbe Interact. Note: PMID: 25608179 Number of accessions cited: 1
  • Karan, R., T. De Leon, H. Biradar, & P.K. Subudhi. 2012. Salt stress induced variation in DNA methylation pattern and its influence on gene expression in contrasting rice genotypes. PLoS One 7(6)e40203. Number of accessions cited: 1
  • Koelmel, J., T. Leland, H. Wang, D. Amarasiriwardena, & B. Xing. 2013. Investigation of gold nanoparticles uptake and their tissue level distribution in rice plants by laser ablation-inductively coupled-mass spectrometry. Environm. Pollut. 174:222-228. DOI: 10.1016/j.envpol.2012.11.026. Number of accessions cited: 1
  • Kyndt, T. et al. 2012. Transcriptome analysis of rice mature root tissue and root tips in early development by massive parallel sequencing. J. Exp. Bot. 63:2141-2157. DOI: 10.1093/jxb/err435. Number of accessions cited: 1
  • Kyndt, T., H. Y. Zemene, A. Haeck, R. Singh, D.De Vleesschauwer, S. Denil, T. De Meyer, M. Hofte, K. Demeestere, & G. Gheysen. 2017. Below-ground attack by the root knot nematode Meloidogyne graminicola predisposes rice to blast disease. Molec. Pl.-Microbe Interact. DOI: 10.1094/MPMI-11-16-0225-R. Number of accessions cited: 1
  • Kyndt, T., K. Nahar, A. Haeck, R. Verbeek, K. Demeestere, & G. Gheysen. 2017. Interplay between carotenoids, abscisic acid and jasmonate guides the compatible rice-Meloidogyne gramnicola interaction. Front. Plant Sci. 8:951. DOI: 10.3389/fpls.2017.00951. Number of accessions cited: 1
  • Kyndt, T., K. Nahar, A. Haegeman, D. De Vleesschauwer, M. Hofte, & G. Gheysen. 2011. Comparing systemic defence-related gene expression changes upon migratory and sedentary nematode attack in rice. Pl. Biol. 14(s1):73-82. DOI: 10.1111/j.1438-8677.2011.00524.x. Number of accessions cited: 1
  • Kyndt, T., S. Denil, A. Haegeman, G. Trooskens, L. Bauters, W. V. Criekinge, T. De Meyer, & G. Gheysen. 2012. Transcriptional reprogramming by root knot and migratory nematode infection in rice. New Phytol. 196:887-900. DOI: 10.1111/j.1469-8137.2012.04311.x. Number of accessions cited: 1
  • Kyndt, T., S. Denil, L. Bauters, W. V. Criekinge, & T. De Meyer. 2014. Systemic suppression of the shoot metabolism upon rice root nematode infection. PLoS One 9(9):e106858. Number of accessions cited: 1
  • Lakshmanan, L., J. Cottone, & H.P. Bais. 2016. Killing two birds with one stone: natural rice rhizospheric microbes reduce arsenic uptake and blast infections in rice. Front. Plant Sci. 7:1514. DOI: 10.3389/fpls.2016.01514. Number of accessions cited: 1
  • Lubkowitz, M. 2011. The oligopeptide transporters: a small gene family with a diverse group of substrates and functions? Molec. Pl. pp. 1-9. DOI: 10.1093/mp/ssr004. Note: 4(3):407-415. Number of accessions cited: 1
  • Nahar, K., T. Kyndt, D. De Vleesschauwer, M. Hofte, & G. Gheysen. 2011. The jasmonate pathway is a key player in systemically induced defense against root knot nematodes in rice. Pl. Physiol. (Lancaster) 157:305-316. DOI: 10.1104/pp.111.177576. Number of accessions cited: 1
  • Nahar, K., T. Kyndt, Y. B. Nzogela, & G. Gheysen. 2012. Abscisic acid interacts antagnostically with classical defense pathways in rice-migratory nematode interaction. New Phytol. 196:901-913. DOI: 10.1111/j.1469-8137.2012.04310.x. Number of accessions cited: 1
  • Pokhrel, S., S. K. Ponniah, Y. Jia, O. Yu, & M. Manoharan. 2021. Transgenic rice expressing isoflavone synthase gene from soybean shows resistance against blast fungus (Magnaporthe oryzae). Pl. Dis. DOI: 10.1094/PDIS-08-20-1777-RE. Number of accessions cited: 1
  • Ponniah, S. K., Z. Shang, M. A. Akbudak, V. Srivastava, & M. Manoharan. 2017. Down-regulation of hydroxycinnamoyl CoA: shikimate hydroxycinnamoyl transferase, cinnamoyl CoA reductase, and cinnamoyl alcohol dehydrogenase leads to lignin reduction in rice (Oryza sativa L. ssp. japonica cv. Nipponbare). Pl. Biotechnol. J. 11:17-27. DOI: 10.1007/s11816-017-0426-y. Number of accessions cited: 1
  • Singh, R. R. et al. 2019. Systemic defense activation by COS-OGA in rice against root-knot nematodes depends on stimulation of the phenylpropanoid pathway. Plant Physiol. Biochem. 142:202-210. DOI: 10.1016/j.plaphy.2019.07.003. Number of accessions cited: 1
  • Singh, R. R. et al. 2020. Ascorbate oxidation activates systemic defence against root-knot nematode Meloidogyne graminicola in rice. J. Exp. Bot. 71:4271-4284. DOI: 10.1093/jxb/eraa171. Number of accessions cited: 1
  • Thilmony, R., M. Guttman, J. G. Thomson, & A. E. Blechl. 2009. The LP2 leucine-rich repeat receptor kinase gene promoter directs organ-specific, light-responsive expression in transgenic rice. Pl. Biotechnol. J. 7:867-882. DOI: 10.000/j.1467-7652.2009.00449.x. Number of accessions cited: 1
  • Thomas, J. et al. 2019. RNA-seq reveals differentially expressed genes in rice (Oryza sativa) roots during interactions with plant-growth promoting bacteria, Azospirillum brasilense. PLoS One 14(5):e0217309. DOI: 10.1371/journal.pone.0217309. Number of accessions cited: 1
  • Thomas, J., R. Histenbrand, M. J. Bowman, H. R. Kim, M. E. Winn, & A. Mukherjee. 2020. Time-course RNA-seq analysis provides an improved understanding of gene regulation during the formation of nodule-like structures in rice. Pl. Molec. Biol. DOI: 10.1007/s11103-020-00978-0. Number of accessions cited: 1
  • Wu, Yufeng, Wenli Zhang, & Jiming Jiang. 2014. Genome-wide nucleosome positioning is orchestrated by genomic regions associated with DNase I hypersensitivity in rice. PLoS Genet. 10(5). Note: e1004378 Number of accessions cited: 1
  • Yan, H., P. B. Talbert, H. R. Lee, J. Jett, S. Henikoff, et al. 2008. Intergenic locations of rice centromeric chromatin. PLoS Biol. 6(11):e286. DOI: 10.1371/journal.pbio.0060286. Number of accessions cited: 1
  • Yan, Huihuang, S. Kikuchi, P. Neumann, W. Zhang, Y. Wu, F. Chen, & J. Jiang. 2010. Genome-wide mapping of cytosine methylation revealed dynamic DNA methylation patterns associated with genes and centromeres in rice. Plant J. 63:353-365. Number of accessions cited: 1
  • Zhang, Tao, et al. 2013. The CentO satellite confers translational and rotational phasing on cenH3 nucleosomes in rice centromeres. Proc. Natl. Acad. Sci. U.S.A. 110(50)e4875-e4883. DOI: 10.1073/pnas.1319548110. Number of accessions cited: 1
  • Zhang, Wenli, et al. 2012. High-resolution mapping of open chromatin in the rice genome. Genome Res. 22:151-162. DOI: 10.1101/gr.131342.111. Number of accessions cited: 1
  • Zhu, Zheng-Jiang, et al. 2012. Effect of surface charge on the uptake and distribution of gold nanoparticles in four plant species. Environm. Sci. Technol. 46:12391-12398. Number of accessions cited: 1
Pedigree

Observations

Phenotype Data

CategoryDescriptorDescriptionValueSample SizeStudyInventoryAvailability
PHENOLOGYDays to FlowerDays from emergence to flowering. Actual values. See also related descriptor Days to Anthesis.83 GSOR.2017.FIELD.OBSGSOR 100 A18FA3 SDNot Available