Details for: GSOR 104005, Oryza sativa L., SC14:5


Summary Data
Taxonomy:
Oryza sativa L.
Top Name:
SC14:5
Origin:
Donated – Arkansas, United States
Received by NPGS:
18 Mar 2019
Improvement Status:
Breeding material
Reproductive Uniformity:

Recombinant Inbred Line
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Availability
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Seed5 countGSOR 104005 A18SU3 SD
 
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Core Passport Data
Taxonomy:
Oryza sativa L.
Top Name:
SC14:5
Origin:
Donated – Arkansas, United States
Received by NPGS:
18 Mar 2019
Improvement Status:
Breeding material
Reproductive Uniformity:

Recombinant Inbred Line
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Source History
Donated
18 March 2019.
Arkansas County, Arkansas, United States

Donor(s):
Accession Names and Identifiers
SC14:5
Type: Donor identifier

GSOR 104005
Type: Site identifier

Narrative
The ‘Estrela’/NSFTV199 mapping population was developed from a single F1 plant derived from a cross between the Rice Diversity Panel 1 (RDP1) accessions, Estrela (GSOR301227) and NSFTV199 (GSOR301190). Estrela originated from Colombia and the origin of NSFTV199 is unknown. Both accessions were classified as tropical japonica accessions based on 36 simple sequence repeat (SSR) markers and selected because they were phenotypically and genotypically diverse within the tropical japonica subpopulation. Subsequent genotyping with 700,000 single nucleotide polymorphism (SNP) markers classified Estrela as an admixture of japonica and NSFTV199 as tropical japonica. The population consists of 276 F2:9 recombinant inbred lines (GSOR104003 through GSOR104282) which were genotyped with 65 SSR markers. In addition, the parents and 256 of the 276 RILs were genotyped with an additional 69 SSR markers. The population was phenotyped for eight agronomic traits (days to heading, plant height, flag leaf length and width, leaf pubescence, culm habit, awn presence and seed shattering), six panicle architecture traits (panicle length; number of primary branches, florets, seeds and sterile florets per panicle; and percent fertility) and nine grain traits (seed length, width and length to width ratio with and without the hull; percent chalk in brown rice with and without the broken kernels, and 100-seed weight). The published linkage map was constructed based on 132 SSR markers and 256 RILs. The panicle and seed morphology of the parents and RILs, were documented with digital images.
Oryza sativa L.
Genus:
Oryza
Section:
Oryza
Subsection:
Oryza
Family:
Poaceae (alt. Gramineae)
Subfamily:
Oryzoideae
Tribe:
Oryzeae
Subtribe:
Oryzinae
Nomen number:

26077
Place of publication:

Sp. pl. 1:333. 1753
Comment:
some seed lots of domesticated rice may contain contaminants of a noxious weed hybrid-form that are not distinguishable by seed visualization, which is responsible for the rice-growing state's noxious-weed seed regulations indicated below
Verified:
05/11/1992 by ARS Systematic Botanists.
Other conspecific taxa
Autonyms (not in current use), synonyms and invalid designations
Autonym(s)
Oryza sativa L. f. sativa
Oryza sativa L. subsp. sativa
Oryza sativa L. var. sativa

Heterotypic Synonym(s)
Common names
LanguageNameAlternate namenoteseqCitation
EnglishAsian rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Englishlowland rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Englishrice  1Wiersema, J. H. & B. León. 1999. World economic plants: a standard reference CRC Press, Boca Raton, FL.
Englishupland rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Arabicrozz  2Boulos, L. 1999-. Flora of Egypt
Frenchriz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
GermanReis  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Indiachavel  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Italianriso  2Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Japanese Rōmajiine  2Batra, L. R. 1995. Names of Japanese plants sorted by their Japanese names in Romanized Katakana and scientific nomenclature
Portuguesearroz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Spanisharroz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Swedishris  2Aldén, B., S. Ryman, & M. Hjertson. 2012. Svensk Kulturväxtdatabas, SKUD (Swedish Cultivated and Utility Plants Database; online resource)
Transcribed Chinesedao  2Wu Zheng-yi & P. H. Raven et al., eds. 1994-. Flora of China (English edition).
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Citations
  • Eizenga, G. C., M. H. Jia, A. K. Jackson, D. L. Boykin, M. Liakat Ali, E. Shakiba, N. T. Tran, S. R. McCouch, & J. D. Edwards. 2019. Validation of yield component traits identified by genome-wide association mapping in a tropical japonica × tropical japonica rice biparental mapping population. Pl. Genome 12:180021. DOI: 10.3835/plantgenome2018.04.0021. Number of accessions cited: 278
Pedigree