Details for: GSOR 103501, Oryza sativa L., Lemont (parent)


Summary Data
Taxonomy:
Oryza sativa L.
Top Name:
Lemont (parent)
Origin:
Donated –
Received by NPGS:
31 Jan 2019
Improvement Status:
Cultivar
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Availability
FormQuantityNoteInventoryCart
Seed5 gramGSOR 103501 A18FA3 SD
 
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Core Passport Data
Taxonomy:
Oryza sativa L.
Top Name:
Lemont (parent)
Origin:
Donated –
Received by NPGS:
31 Jan 2019
Improvement Status:
Cultivar
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Source History
Donated
31 January 2019.
Arkansas County, Arkansas, United States

Donor(s):
Accession Names and Identifiers
Lemont (parent)
Type: Donor identifier

GSOR 103501
Type: Site identifier

Narrative
Since its development, LT-RILs have been used to discover more than 400 QTLs affecting a wide range of traits including days to heading, grain yield and yield component traits (e.g., tillering rates and panicle number), plant metabolomics (e.g., C/N partitioning), grain milling quality and nutritional value (concentrations of 16 elements), seedling cold tolerance, resistance to several diseases (rice blast, sheath blight, bacterial leaf blight, and bacterial panicle blight), and resistance to an insect (brown planthopper). The location and breeding value of several QTLs discovered among LT-RILs have been validated using a companion mapping population consisting of 123 TeQing-into-Lemont backcross introgression lines (known as TILs, seed also available via GSOR). The population in GSOR contains 292 LT-RILs in the F14 to F16 generation, plus seed from the two parents, Lemont and TeQing; genotypic data is available on 272 of the LT-RILs. All QTL mapping publications to date have been based on the RFLP genotypes (175 loci) determined from the F10 generation. The LT-RILs have undergone 4 to 6 generations of advancement since that time, and likely contain fewer heterozygous loci than indicated by the F10 RFLP dataset. A dataset of ≤ 100 SSR loci per LT-RIL genotyped from the F13 generation is also available.
Oryza sativa L.
Genus:
Oryza
Section:
Oryza
Subsection:
Oryza
Family:
Poaceae (alt. Gramineae)
Subfamily:
Oryzoideae
Tribe:
Oryzeae
Subtribe:
Oryzinae
Nomen number:

26077
Place of publication:

Sp. pl. 1:333. 1753
Comment:
some seed lots of domesticated rice may contain contaminants of a noxious weed hybrid-form that are not distinguishable by seed visualization, which is responsible for the rice-growing state's noxious-weed seed regulations indicated below
Verified:
05/11/1992 by ARS Systematic Botanists.
Other conspecific taxa
Autonyms (not in current use), synonyms and invalid designations
Autonym(s)
Oryza sativa L. f. sativa
Oryza sativa L. subsp. sativa
Oryza sativa L. var. sativa

Heterotypic Synonym(s)
Common names
LanguageNameAlternate namenoteseqCitation
EnglishAsian rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Englishlowland rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Englishrice  1Wiersema, J. H. & B. León. 1999. World economic plants: a standard reference CRC Press, Boca Raton, FL.
Englishupland rice  1Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Arabicrozz  2Boulos, L. 1999-. Flora of Egypt
Frenchriz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
GermanReis  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Indiachavel  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Italianriso  2Hanelt, P., ed. 2001. Mansfeld's encyclopedia of agricultural and horticultural crops. Volumes 1-6
Japanese Rōmajiine  2Batra, L. R. 1995. Names of Japanese plants sorted by their Japanese names in Romanized Katakana and scientific nomenclature
Portuguesearroz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Spanisharroz  2Rehm, S. 1994. Multilingual dictionary of agronomic plants
Swedishris  2Aldén, B., S. Ryman, & M. Hjertson. 2012. Svensk Kulturväxtdatabas, SKUD (Swedish Cultivated and Utility Plants Database; online resource)
Transcribed Chinesedao  2Wu Zheng-yi & P. H. Raven et al., eds. 1994-. Flora of China (English edition).
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Citations
  • Barnaby, J. Y., S. R. M. Pinson, J. Chun, & L. T. Bui. 2019. Covariation among root biomass, shoot biomass, and tiller number in three rice populations. Crop Sci. (Madison) 59:1-15. DOI: 10.2135/cropsci2018.09.0595. Number of accessions cited: 50
  • Lee, J., T. M. Bricker, M. Terry, M. LeFevre, & S. R. M. Pinson. 2006. Proteomic and genetic approaches to identifying defense‑related proteins in rice challenged with the fungal pathogen Rhizoctonia solani. Molec. Pl. Pathol. 7:405‑416. DOI: 10.1111/j.1364-3703.2006.00350.x. Number of accessions cited: 294
  • Li, B. et al. 2016. An integrative genetic study of rice metabolism, growth and stochastic variation reveals potential C/N partitioning loci. Sci. Rep. 6:30143. DOI: 10.1038/srep30143. www.nature.com/srep/ Number of accessions cited: 294
  • Li, Z. et al. 1999. A 'defeated' rice resistance gene acts as a QTL against a virulent strain of Xanthomonas oryzae pv.oryzae. Molec. Gen. Genet. 26:58-63. Number of accessions cited: 294
  • Mei, H., J. Luo, L.-B. Guo, & Z. Li. 2002. Molecular mapping of QTLs for rice milling yield traits. Acta Genet. Sin. 29:791-797. Note: replaced by Journal of Genetics and Genomics Number of accessions cited: 294
  • Pinson, S. R. M. et al. 2012. Registration of a rice gene-mapping population consisting of ‘TeQing’-into-‘Lemont’ backcross introgression lines. J. Pl. Registr. 6:128-135. DOI: 10.3198/jpr2011.02.0066crmp. Number of accessions cited: 294
  • Pinson, S. R. M., A. K. M. Shahjahan, M. C. Rush, & D. E. Groth. 2010. Bacterial panicle blight resistance QTLs in rice and their association with other disease resistance loci and heading date. Crop Sci. (Madison) 50:1287–1297. DOI: 10.2135/cropsci2008.07.0447. Number of accessions cited: 294
  • Pinson, S. R. M., F. M. Capdevielle, & J. H. Oard. 2005. Molecular dissection of the primary sink size and its related traits in rice. Crop Sci. (Madison) 45:503-510. DOI: 10.2135/cropsci2005.0503. Number of accessions cited: 294
  • Pinson, S. R. M., Y. Wang, & R. E. Tabien. 2015. Mapping and validation of quantitative trait loci associated with tiller production in rice (Oryza sativa L.). Crop Sci. (Madison) 55:1537-1551. DOI: 10.2135/cropsci2014.09.0644. Number of accessions cited: 294
  • Samonte, S. O. P. B. et al. 2006. Nitrogen utilization efficiency: relationships with grain yield, grain protein, and yield-related traits in rice. Agron. J. 98:168-176. DOI: 10.2134/agronj2005.0180. Number of accessions cited: 294
  • Tabien, R. E. et al. 2000. Mapping of four major rice blast resistance genes from ‘Lemont’ and ‘TeQing’ and evaluation of their combinatorial effect for field resistance. Theor. Appl. Genet. 101:1215-1225. DOI: 10.1007/s001220051600. Number of accessions cited: 294
  • Tabien, R. E. et al. 2002. Mapping QTLs for field resistance to the rice blast pathogen and evaluating their individual and combined utility in improved varieties . Theor. Appl. Genet. 105:313-324. DOI: 10.1007/s00122-002-0940-2. Number of accessions cited: 296
  • Tong, H. H., H. W. Mei, X. Q. Yu, X. Y. Zu, M. S. Li, S. Q. Zhang, & L. J. Luo. 2006. Identification of related QTLs at late developmental stage in rice (Oryza sativa L.) under two nitrogen levels. Acta Genet. Sin. 33:458–467. DOI: 10.1016/S0379-4172(06)60073-5. Note: replaced by Journal of Genetics and Genomics Number of accessions cited: 294
  • Xu, J. L. et al. 1999. QTLs affecting leaf rolling and folding in rice. Rice Genet. Newslett. 6:51-52. Number of accessions cited: 294
  • Xu, J. L. et al. 2004. Molecular dissection of the primary sink size and its related traits in rice. Pl. Breed. (New York) 123:43–50. DOI: 10.1046/j.1439-0523.2003.00936.x. Number of accessions cited: 294
  • Xu, X. F., H. W. Mei, L. J. Luo, X. N. Cheng, & Z. K. Li. 2002. RFLP‑facilitated investigation of the quantitative resistance of rice to brown planthopper (Nilaparvata lugens). Theor. Appl. Genet. 104:248-253. DOI: 10.1007/s00122-001-0777-0. Number of accessions cited: 294
  • Zhang, M. et al. 2014. Mapping and validation of quantitative trait loci associated with concentrations of 16 elements in unmilled rice grain. Theor. Appl. Genet. 127:137-165. DOI: 10.1007/s00122-013-2207-5. Number of accessions cited: 294
  • Zhang, Z. H., S. B. Yu, T. Yua, Z. Huang, & Y. G. Zhua. 2005. Mapping quantitative trait loci (QTLs) for seedling-vigor using recombinant inbred lines of rice (Oryza sativa L.) . Field Crops Res. 91:161–170. DOI: 10.1016/j.fcr.2004.06.004. Number of accessions cited: 294
  • Zhang, Z. H., X. S. Qu, S. Wan, L. H. Chen, & Y. G. Zhu. 2005. Comparison of QTL controlling seedling vigour under different temperature conditions using recombinant inbred lines in rice (Oryza sativa). Ann. Bot. (Oxford) 95:423–429. DOI: 10.1093/aob/mci039. Number of accessions cited: 294
  • Zhong, D. B. et al. 1999. QTLs for grain shattering in the Lemont/TeQing RI population. Rice Genet. Newslett. 6:71-73. Number of accessions cited: 294
  • Zhu, L. H., D. B. Zhong, J. L. Xu, S. B. Yu, & Z. K. Li. 2008. Differential expression of lodging resistance related QTLs in rice. Pl. Sci. (Elsevier) 175:898–905. DOI: 10.1016/j.plantsci.2008.09.001. Number of accessions cited: 294
Pedigree

Observations

Phenotype Data

CategoryDescriptorDescriptionValueSample SizeStudyInventoryAvailability
PHENOLOGYDays to AnthesisNumber of days from effective seeding date until 50% of main tillers show panicles at least partly emerged from boot. Coded values. See also related descriptor Days to Flower.3 - 80 - 89 DAYS GSOR.LT RILs.2018 STUTTGARTGSOR 103501 A18FA3 SD