Details for: GSOR 311700, Oryza officinalis Wall. ex G. Watt, 101073-O


Summary Data
Taxonomy:
Oryza officinalis Wall. ex G. Watt
Top Name:
101073-O
Origin:
Collected – Mindanao, Philippines
Received by NPGS:
17 May 1995
Improvement Status:
Wild material
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Availability
FormQuantityNoteInventoryCart
Seed20 countGSOR 311700 A08FA3 SD
 
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KERNELS

Core Passport Data
Taxonomy:
Oryza officinalis Wall. ex G. Watt
Top Name:
101073-O
Origin:
Collected – Mindanao, Philippines
Received by NPGS:
17 May 1995
Improvement Status:
Wild material
Form Received:
Seed
Life Form:
Annual
Life Cycle:
Annual
Source History
Collected

Mindanao, Philippines
Locality: Ilian, 17 km to Marbel, Cotabato
Coordinates: 7.0300, 125.0000 (Map it)
Elevation: 100m.
Georeference protocol: Gazetteer
Comment: Elevation derived from the GTOPO30 dataset (0.1 x 0.1 degree grid).
Collector(s):
Donated
17 May 1995.


Donor(s):
Accession Group(s)
Group name: GSOR Core Collection
Note: 
To search for accessions in this group, click the following link. GSOR Core Collection

Accession Names and Identifiers
101073-O
Type: Donor identifier

A101073-R
Type: Donor identifier

IRRI-IRGC-101073
Type: Collector identifier
Group: SINGER-IRRI-RICE

NSGC 5943
Type: Other or unclassified name

Narrative
Core Accession from PI 590412. The Core Collection containing about 10% of the whole NSGC Rice Collection was assembled by stratified random sampling method in 2002, evaluated comprehensively for 25 characteristics and proven to be highly representative of the whole collection. Information drawn from the Core Collection can effectively be used to assess the diversity of the whole collection with 88% certainty. A single plant was selected from each Core accession in 2006 and bulk seed from the single plant selection was produced in 2007 and deposited in the GSOR. DNA extracted from the selected plant was analyzed with one indel marker and 71 SSR (Single Sequence Repeat) markers that cover the entire rice genome about 30 cM apart. A Mini-Core Collection containing about 10% of the Core Collection was subsequently developed and genotyped through various means.

Because the Core and Mini-Core were developed from single-plant selections from the NSGC accessions which may be phenotypically variable, there is the possibility that the GSOR seed sources are not exactly the same as the NSGC sources.

Oryza officinalis Wall. ex G. Watt
Genus:
Oryza
Section:
Oryza
Subsection:
Latifoliae
Family:
Poaceae (alt. Gramineae)
Subfamily:
Oryzoideae
Tribe:
Oryzeae
Subtribe:
Oryzinae
Nomen number:

26071
Place of publication:

Dict. econ. prod. India 5:501. 1891
Verified:
04/03/2009 by ARS Systematic Botanists.
Other conspecific taxa
Autonyms (not in current use), synonyms and invalid designations
Autonym(s)
Oryza officinalis Wall. ex G. Watt subsp. officinalis

Heterotypic Synonym(s)
Oryza latifolia Desv. var. silvatica A. Camus
Oryza minuta J. Presl var. silvatica (A. Camus) Veldkamp

Common names
LanguageNameAlternate namenoteseqCitation
Transcribed Chineseyao yong dao  2Wu Zheng-yi & P. H. Raven et al., eds. 1994-. Flora of China (English edition).
Annotations
Other Links
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Pathogens
Vouchers
Citations
  • Agrama, H. A, W. Yan, F. Lee, R. Fjellstrom, M.-H. Chen, M. Jia, & A. McClung. 2009. Genetic assessment of a Mini-Core subset developed from the USDA rice genebank. Crop Sci. (Madison) 49:1336-1346. DOI: 10.2135/cropsci2008.06.0551. Number of accessions cited: 1794
  • Agrama, H. A. & W. G. Yan. 2009. Association mapping of straighthead disorder induced by arsenic in Oryza sativa. Pl. Breed. (New York) 128:551-558. Number of accessions cited: 1794
  • Agrama, H. A. & W. G. Yan. 2009. Genetic diversity and relatedness of rice cultivars resistant to straighthead disorder. Pl. Breed. (New York) 129:304-312. Number of accessions cited: 1794
  • Agrama, H. A., W. G. Yan, M. Jia, R. Fjellstrom, & A. M. McClung. 2010. Genetic structure associated with diversity and geographic distribution in the USDA rice world collection. Nat. Sci. (Sci. Res. Press) 2:247-291. DOI: 10.4236/ns.2010.24036. Number of accessions cited: 1755
  • Agrama, H., A. M. McClung, & WenGui Yan. 2011. Using minimum DNA marker loci for accurate population classification in rice (Oryza sativa L.). Molec. Breed. 29:413-425. DOI: 10.1007/s11032-011-9558-x. Number of accessions cited: 1794
  • Gu, Xing-You et al. 2011. Association between seed dormancy and pericarp color is controlled by a pleiotropic gene that regulates abscisic acid and flavonoid synthesis in weedy red rice. Genetics 189:1515-1524. Number of accessions cited: 4
  • Hu, Biao-Lin et al. 2012. Analysis on genetic diversity of phenotypic traits in rice (Oryza sativa L.) core collection and its comprehensive assessment (in Chinese). Acta Agron. Sin. 38(5)829-839. Number of accessions cited: 1794
  • Jia, Limeng et al. 2011. Searching for germplasm resistant to Sheath Blight from the USDA Rice Core Collection. Crop Sci. (Madison) 51:1507-1517. Number of accessions cited: 1794
  • Li, X. B., W. G. Yan, H. Agrama, B. L. Hu, L. M. Jia, M. Jia, A. Jackson, K. Moldenhauer, A. McClung, & D. X. Wu. 2010. Genotypic and phenotypic characterization of genetic differentiation and diversity in the USDA rice mini-core collection. Genetica 138:1221-1230. Number of accessions cited: 1755
  • Wang, X., R. Fjellstrom, Y. Jia, W. G. Yan, M. H. Jia, B. E. Scheffler, D. Wu, Q. Shu, & A. McClung. 2009. Characterization of Pi-ta blast resistance gene in an international rice core collection. Pl. Breed. (New York) 129:491-501. DOI: 10.0000/j.1439-0523.2009.01706.x. Number of accessions cited: 1794
  • Yan, W. G., Y. Li, H. A. Agrama, D. Luo, F. Gao, X. Lu, & G. Ren. 2009. Association mapping of stigma and spikelet characteristics in rice (Oryza sativa L.). Molec. Breed. 24:277-292. DOI: 10.1007/s11032-009-9290-y. Number of accessions cited: 1794
  • Yan, W. G. 2012. Genetic characterization of global rice germplasm for sustainable agriculture (book chapter). In: Aladjadjiyan, A., ed., Food production: approaches, challenges and tasks 243-270. DOI: 10.5772/1870. Note:
    • Intech – Open Access Company
    • http://www.intechopen.com/books/food-production-approaches-challenges-and-tasks
    Number of accessions cited: 260
  • Yan, W., H. Agrama, M. Jia, R. Fjellstrom, & A. McClung. 2010. Geographic description of genetic diversity and relationships in the USDA Rice World Collection. Crop Sci. (Madison) 50:2406-2417. Number of accessions cited: 1663
  • Yan, Wengui, J. N. Rutger, R. J. Bryant, H. E. Bockelman, R. G. Fjellstrom, Ming-Hsuan Chen, T. H. Tai, & A. M. McClung. 2007. Development and evaluation of a core subset of the USDA rice germplasm collection. Crop Sci. (Madison) 47:869-878. Number of accessions cited: 1793
Pedigree
Intellectual Property Rights
IRRI Disclaimer. Issued: 29 Dec 1993.

Observations

Phenotype Data

CategoryDescriptorDescriptionValueSample SizeStudyInventoryAvailability
CHEMICALAMYLOSEPercent amylose of milled rice.27 2010.CORE.EVALUATION Not Available
DISEASESheath BlightReaction to Sheath Blight (incited by Rhizoctonia solani)..47 SHEATHBLIGHTRESISTANT2011CROPSCI Not Available
GROWTHPlant Height 2Plant height measured in centimeters from the soil surface to the middle of extended panicles. Actual values. See also related descriptor Plant Height 1.103 2010.CORE.EVALUATION Not Available
MORPHOLOGYWIDTH OF KERNELWidth of kernel in millimeters for brown (dehulled) rice.2.5 2010.CORE.EVALUATION Not Available
MORPHOLOGYKERNEL LENGTH/WIDTH RATIOLength/Width ratio for brown (dehulled) rice2.5 2010.CORE.EVALUATION Not Available
MORPHOLOGYPlant Type - Culm AngleCulm Angle, rice direct-seeded in rows.1 - ERECT 2010.CORE.EVALUATION Not Available
MORPHOLOGYPanicle TypePanicle type classified according to their mode of branching, angle of primary branches, and spikelet density.5 - INTERMEDIATE 2010.CORE.EVALUATION Not Available
MORPHOLOGYHull ColorHull color (Lemma and Palea) when terminal spikelets are ripened6 - MOTTTLED, SPECKLED, OR PIEBALD 2010.CORE.EVALUATION Not Available
MORPHOLOGYHull CoverPubescence of lemma or palea3 - HAIRS ON UPPER PORTION ONLY 2010.CORE.EVALUATION Not Available
MORPHOLOGYAwn TypeAmount and extent of awns.0 - ABSENT 2010.CORE.EVALUATION Not Available
MORPHOLOGYLodgingEstimated amount of plant lodging near maturity.1 - 0 - 10% LODGED 2010.CORE.EVALUATION Not Available
MORPHOLOGYBran ColorColor of seed coat (bran/pericarp) when fully mature and dry.2 - LIGHT BROWN 2009.GERMPLASM.EVAL Not Available
MORPHOLOGYLength of KernelLength of kernel in millimeters for brown (dehulled) rice.6.3 2010.CORE.EVALUATION Not Available
PHENOLOGYDays to FlowerDays from emergence to flowering. Actual values. See also related descriptor Days to Anthesis.75 2010.CORE.EVALUATION Not Available
PRODUCTION1000 Kernel Weight-BrownThousand kernel weight of brown rice, based on a count of 100 or more. Expressed in grams.22.1 2010.CORE.EVALUATION Not Available